A certificate request (also CSR or certification signing request) is a message sent from an applicant to a certificate authority in order to apply for a digital identity certificate. For more information on Certificate Requests, visit the wikipedia article found here.
This documentation uses variables denoted with a $ followed by a keyword, all this emphasized with red text (i.e. $variable). These variables should be replaced with appropriate values. Suggested default values are denoted with a variable followed by an equal sign and a value (i.e $variable = value).
Two files are created upon completion of these instructions. $domain.key is generated and put into the private folder. This is a private key file specfic to the domain that the certificate request was created for. $domain.csr is generated and put into the CA folder. This is a certificate request file and can be used to generate a certificate specific to the domain the certificate request was created for.
Two files are created upon completion of these instructions. $domain.crt is created and put into the certs folder. This is a certificate file specfic to the domain that the certificate request was created for. $cert_number.pem is generated and put into the newcerts folder. This is an X.509 file containing both the $domain.key and $domain.crt file information.